clojure-uk

A place for people in the UK, near the UK, visiting the UK, planning to visit the UK or just vaguely interested to randomly chat about things (often vi and emacs, occasionally clojure). More general the #ldnclj
dharrigan 2020-08-28T06:29:54.094700Z

Good Morning!

dharrigan 2020-08-28T07:34:14.095100Z

anyone here use CopyQ on Linux (i3?)

mccraigmccraig 2020-08-28T07:41:44.095400Z

¿måning?

2020-08-28T07:44:22.095700Z

morning

alexlynham 2020-08-28T08:09:17.095800Z

morning

dharrigan 2020-08-28T08:46:33.096300Z

I'm struggling with java-time this morning!

dharrigan 2020-08-28T08:48:04.098100Z

I have a string "2020-07-03T23:00:00.000+00:00" that I'm trying to parse into an offset-date-time, but java-time refuses to keep the +00:00, squashing it down to a Z. I know Z means the same as +00:00, but even the Java DateTimeFormatter allows you to keep the "+00:00" if you want to (and I want to!)

dharrigan 2020-08-28T08:48:11.098400Z

I think I'll have to hit the java api directly

dominicm 2020-08-28T08:51:54.098600Z

why do you care that it's Z?

dominicm 2020-08-28T08:52:04.098900Z

won't it come out how you want on the other side once parsed?

dharrigan 2020-08-28T08:52:35.099100Z

Reasons

dominicm 2020-08-28T08:57:46.099400Z

heh, those reasons might be met without affecting the parse stage

dharrigan 2020-08-28T08:58:05.099600Z

🙂

dharrigan 2020-08-28T08:58:19.100Z

Actually, I think I know what I can do...man, I hate messing with times 🙂

dominicm 2020-08-28T08:58:28.100400Z

time is the worst

dharrigan 2020-08-28T08:58:45.100800Z

I'm trying to ensure a kotlin application, using Spring and Jackson can also work with the same data that Clojure using Cheshire can produce

dharrigan 2020-08-28T08:58:53.101100Z

and there is some quirks going on with the times 🙂

dharrigan 2020-08-28T09:00:05.102400Z

one thing that I would love to see in Cheshire, and it was raised as a bug (then closed), is to maintain the order of JSON keys. Now, I know that according to the RFC, json key ordering is not a requirement - but the majority of other libraries maintain the order of the keys in the map

dharrigan 2020-08-28T09:00:20.102700Z

it makes comparing things a lot simplier 🙂

alexlynham 2020-08-28T09:34:43.104500Z

Z is better if you're shuffling around JSON timestamps usually

alexlynham 2020-08-28T09:35:36.104800Z

I spent a good chunk of last week faffing with JS/typescript time parsing and let me tell you, at least java times have runtime errors and meticulously specified parsers

alexlynham 2020-08-28T09:35:54.104900Z

not 'I didn't understand that - you must mean now() in your system timezone'

dharrigan 2020-08-28T09:43:51.105500Z

🙂 I solved the problem. It was something I introduced a few weeks ago to make things "prettier", but that ended up storing the wrong thing in the db.

dharrigan 2020-08-28T09:43:55.105700Z

bad david

2020-08-28T10:11:18.106900Z

trouble with Pandemic AND schools going back, then when your child brings a cold back from school, theres quite a long period of doubt about what you are suffering from

2020-09-01T07:22:36.117100Z

> The RT-PCR assays used for the UK’s COVID-19 testing programme have been verified by PHE, and show over 95% sensitivity and specificity. This means that under laboratory conditions, these RT-PCR tests should never show more than 5% false positives or 5% false negatives. It goes on to discuss the operational rates: > An attempt has been made to estimate the likely false-positive rate of national COVID-19 testing programmes by examining data from published external quality assessments (EQAs) for RT-PCRassays for other RNA viruses carried out between 2004-2019 [7]. Results of 43 EQAs were examined, giving a median false positive rate of 2.3% (interquartile range 0.8-4.0%). Operational false negatives are of course much harder to assess: > The UK operational false negative rate is unknown. A recent study [6] combined results from seven studies (>1300 swab test results associated with time of disease onset) to create a model of the false negative rate for SARS-CoV-2 RT-PCR assays against time since infection. Their model suggested that in the first four days of infection (pre-symptomatic phase) the probability of a false negative in an infected person decreased from 100% on day 1 (i.e. a false negative was certain) to 67% on day 4. It then decreased to 38% on day 5 (dayof symptom onset) to a minimum of 20% on day 8 of infection (i.e. one in five people still give a false negative result despite having experienced three days of COVID-19 symptoms). The false negative rate then increased from day 9 (21%) to day 21 (66%). Point estimates and confidence intervals are shown in Figure 1 [taken from 6]. So in practice there’s quite a lot of operational error… Having taken the tests 4 times (3x self administered) I can confirm it’s pretty unpleasant and quite awkward to self administer. I very nearly threw up the last time doing the throat swab. more details in the Public Health England report: https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/895843/S0519_Impact_of_false_positives_and_negatives.pdf

2020-08-28T10:11:40.107Z

however none of us have a dry cough

2020-08-28T10:11:53.107200Z

or an obvously high fever

2020-08-28T10:12:13.107400Z

or impared tast/smell (other than what a blocked nose brings)

2020-08-28T10:12:20.107600Z

so I guess its just a heavy cold...

2020-08-28T10:12:36.107800Z

annoying sore throat though

2020-08-28T11:13:40.108Z

Hope you get better soon.

2020-08-28T12:17:47.108200Z

@ben.hammond Get tested. I’ve been tested 4 times, very easy to book, and there are test sites everywhere now. Last two times we got the results back within 24h.

2020-08-28T12:18:30.108400Z

sore throat is also officially recognised as a symptom now

2020-08-28T13:09:24.108600Z

oh is it, I've not been keeping up

2020-08-28T13:40:47.108800Z

A sore throat was why I got one of those tests (negative)

seancorfield 2020-08-28T15:56:07.109200Z

How accurate are the tests over there? We have a cousin with COVID and her husband tested negative, even tho' he was clearly sick, and the wife tested positive with milder symptoms.

seancorfield 2020-08-28T15:56:54.109400Z

He caught it first -- his symptoms started August 7th -- and then her symptoms started exactly a week later. He was getting better but he's gotten worse in the last couple of days.

seancorfield 2020-08-28T15:57:37.109600Z

I would guess it doesn't cost anything to get tested in the UK (unlike here)?

2020-08-28T16:02:50.109800Z

Yeah it’s totally free for the anti-gen tests, the anti-body tests aren’t as widely available… Though IIRC about £80 to get a private one. I think the tests are pretty accurate; if you fall in the right window at least. I did look at the claimed false positive/negative rates and I seem to remember them being pretty high (like 95+%) but can’t recall the exact figure. I remember finding the exact test process and the official results for it too. I think the biggest risk is that you can test too early or too late for it.

seancorfield 2020-08-28T16:08:10.110Z

Could be. Larry and Vikki both got tested at the same time and he was a week further along with his symptoms. They've been so careful about exposure (they live in rural Alaska so there's not many people to get exposed to -- they think he got it from visiting a government building about a week before his symptoms appeared). Despite BoJo's incompetence, right now I think I'd prefer to be in the UK than in the US, for the affordable healthcare 😐

seancorfield 2020-08-28T16:08:19.110200Z

Thanks for the info.

2020-08-28T16:38:41.110400Z

I had an idea the accuracy was around 80%

2020-08-28T16:39:01.110600Z

although I'm not sure I could lay my hands on the source of that figure

2020-08-28T16:39:37.110800Z

quaranting seems to be emphasing TWO tests a few days apart

2020-08-28T16:42:03.111Z

although if you get a positive, followed by a negative you will be left uncertain...

2020-08-28T16:44:24.111200Z

doing your own, or your loved one's swab must be quite a learned skill