data-science

Data science, data analysis, and machine learning in Clojure https://scicloj.github.io/pages/chat_streams/ for additional discussions
grazfather 2021-03-05T16:00:26.007600Z

What’s going on here?

21-03-05 15:39:10 raspberrypi INFO [oz.core:425] - input: /tmp/8be58180-75c4-4b19-9c93-21a3cb728d24197201720715894158.vl.json
21-03-05 15:39:10 raspberrypi INFO [oz.core:426] - output: /tmp/916168d5-fb17-4525-9b7f-2c81472168694982888235139343259.png
21-03-05 15:39:10 raspberrypi ERROR [oz.core:435] - Problem creating output
21-03-05 15:39:10 raspberrypi ERROR [oz.core:436] -
21-03-05 15:39:10 raspberrypi ERROR [oz.core:689] - Unable to execute static embed
21-03-05 15:39:10 raspberrypi ERROR [oz.core:690] -
                clojure.main.main      main.java:   40
                              ...
                clojure.main/main       main.clj:  616
                clojure.main/main       main.clj:  664
            clojure.main/null-opt       main.clj:  542
          clojure.main/initialize       main.clj:  508
            clojure.main/init-opt       main.clj:  477
         clojure.main/load-script       main.clj:  475
                              ...
                     user/eval140      REPL Input
                              ...
              tempplot.core/-main       core.clj:  162
              tempplot.core/-main       core.clj:  167
           tempplot.core/-main/fn       core.clj:  180
                  oz.core/export!       core.clj:  883
                  oz.core/export!       core.clj:  888
It’s a simple oz/export spec "bla.html"

2021-03-05T18:34:06.014300Z

Thanks for bringing this up @grazfather. Would you please raise an issue over at https://github.com/metasoarous/oz/issues so I can take a look at this? I think I know what's going on here: Oz now tries to embed a static rendering of the visualization in the output. However, I think by default it tries to render as png via the vega-lite cli (for vl2png and friends; png because it won't get bloated with lots of data, like svg). However, that means you need to have the vega-lite npm module installed for that to work. If you don't, it may error out as above. However, it really . If _shouldn't_. Unless png` rendering is explicitly requested, it should fallback to darkstar for rendering (graal compiled vega!). This is actually a great first contribution if anyone is interested in hacking on it. If not, I'll try to tackle this late next week.

2021-03-05T18:34:10.014500Z

Thanks again!

grazfather 2021-03-05T18:35:07.015100Z

actually, I have vega-lite, vega-cli, and vega installed. An earlier error bailed saying that I need to install them

grazfather 2021-03-05T18:35:33.015400Z

I will doublle check if they are installed correctly and file an issue

2021-03-05T20:04:50.015800Z

Ah; I see. Thanks for the update.

2021-03-05T20:05:53.016900Z

Are you sure the vega visualization renders using the live-view (or on the vega-editor site)?

2021-03-05T20:06:28.017400Z

It's possible this is specific to a particular visualization if the cli is on a different version of the vega libs

chrisn 2021-03-05T20:56:17.019300Z

libpython-clj has a new feature I am excited about - https://clj-python.github.io/libpython-clj/libpython-clj2.codegen.html#var-write-namespace.21. These namespaces are safe to AOT and do not auto-call initialize! any more but rather calling them when python hasn't been initialized throws a nice exception. They also 'require' a lot faster than 'require-python' as the metadata generation has already happened.

🎉 5
2021-03-05T22:30:32.021300Z

Hi! We are having our monthly Clojure data science discussion: https://clojurians.zulipchat.com/#narrow/stream/151924-data-science/topic/2021-03 It would be great to come there, read, and comment about your hopes and opinions. Probably, responses will accumulate gradually during the next few days.